v1.1 [May 9, 2008]
-AmberTools updated to version 18
-Previous/Next buttons added to activation/display button rows below the command line, for quickly cycling through (or toggling between) model display and/or activation
-Area/Volume from Web (Surface/Binding Analysis) — removed because the NIH StrucTools server is no longer available
-Multalign Viewer (Sequence) — option to get annotations from the Conserved Domain Database (CDD) removed due to CDD changes
-MD Movie preserves PSF segment name as residue attribute segment, and reports the segment names to the Reply Log as the trajectory is read. Therefore a segment named XYZ could be referenced in a command using the atom specifier :/segment=XYZ
-Upgraded Tk windowing toolkit to fix bug on Mac where specifying multiple coordinate files in MD Movie could hang Chimera.